Description

Check the path to the annotation cache depending if local or on the cloud, or using annotation-cache itself

Input

name
description
pattern

ensemblvep_cache

Path to root cache
Structure: [ path(cache) ]

ensemblvep_cache_version

cache_version to use
Structure: [ val(cache_version) ]

ensemblvep_custom_args

custom args, to check if refseq or merged is needed
Structure: [ val(custom args) ]

ensemblvep_genome

genome to use
Structure: [ val(genome) ]

ensemblvep_species

species to use
Structure: [ val(species) ]

ensemblvep_enabled

Boolean to enable ensemblvep
Structure: [ Boolean ]

snpeff_cache

Path to root cache
Structure: [ path(cache) ]

snpeff_db

db to use
Structure: [ val(db) ]

snpeff_enabled

Boolean to enable snpeff
Structure: [ Boolean ]

help_message

Extra help message to display when error
Structure: [ val(species) ]

Output

name
description
pattern

ensemblvep_cache

Path to ensemblvep cache
Structure: [ val(meta), path(cache) ]

snpeff_cache

Path to snpeff cache
Structure: [ val(meta), path(cache) ]